research

2025

1. GO-Plan: A goal-oriented method for FAIRification planning

   César Bernabé, Isadora Valle , Tiago Prince Sales , and 7 more authors

   Information Services and Use, 2025
2. Restructuring knowledge graphs with conceptual models: implications for machine learning predictions in drug repurposing

   César Bernabé, Rosa Zwart , Pablo Perdomo-Quinteiro , and 7 more authors

   Research Square, 2025

   Preprint

2024

1. Building expertise on FAIR through evolving Bring Your Own Data (BYOD) workshops: describing the data, software, and management-focused approaches and their evolution

   César Bernabé, Lieze Thielemans , Rajaram Kaliyaperumal , and 8 more authors

   Data Intelligence, 2024

2023

1. The use of foundational ontologies in biomedical research

   César Bernabé, Núria Queralt-Rosinach , Vı́tor E Silva Souza , and 4 more authors

   Journal of Biomedical Semantics, 2023
2. A FAIR catalog of ontology-driven conceptual models

   Tiago Prince Sales , Pedro Paulo F Barcelos , Claudenir M Fonseca , and 8 more authors

   Data & Knowledge Engineering, 2023
3. A resource for guiding data stewards to make European rare disease patient registries FAIR

   Philip Van Damme , Pablo Alarcón Moreno , César Bernabé, and 8 more authors

   Data Science Journal, 2023
4. A Method to Improve Alignments Between Domain and Foundational Ontologies

   César Bernabé, C Maria Keet , Zubeida C Khan , and 1 more author

   In Formal Ontology in Information Systems , 2023

2022

1. Towards FAIRification of sensitive and fragmented rare disease patient data: challenges and solutions in European reference network registries

   Bruna Santos Vieira , César Bernabé, Shuxin Zhang , and 8 more authors

   Orphanet journal of rare diseases, 2022

2019

1. GORO 2.0: Evolving an ontology for goal-oriented requirements engineering

   César Bernabé, Vı́tor E Silva Souza , Ricardo de Almeida Falbo , and 2 more authors

   In Advances in Conceptual Modeling: ER 2019 Workshops FAIR, MREBA, EmpER, MoBiD, OntoCom, and ER Doctoral Symposium Papers, Salvador, Brazil, November 4–7, 2019, Proceedings 38 , 2019

2018

1. Where enterprise architecture and early software engineering meet: An approach to use cases definition

   Gabriel M Miranda , César Bernabé, Lucas A Santos , and 1 more author

   In Proceedings of the XVII Brazilian Symposium on Software Quality , 2018