research

2025

  1. The JARDIN Hackathon to Seek Solutions to Overcome Technical Barriers in Health Data Exchange: From the Point of Care to European Registry Networks
    César Bernabé, Daphne Wijnbergen , Alberto Cámara , and 16 more authors
    Preprints, Dec 2025
    Preprint. Version 1
  2. Rare Disease Data Management across Europe: Insights from the JARDIN Survey on Data Sharing and Interoperability
    Ines Oliveira Coelho Henriques , Valentina Sand , Daniela Vicentini Albring , and 12 more authors
    Research Square, Dec 2025
    Preprint. Version 1
  3. GO-Plan: A goal-oriented method for FAIRification planning
    César Bernabé, Isadora Valle , Tiago Prince Sales , and 7 more authors
    Information Services and Use, Dec 2025
  4. Restructuring knowledge graphs with conceptual models: implications for machine learning predictions in drug repurposing
    César Bernabé, Rosa Zwart , Pablo Perdomo-Quinteiro , and 7 more authors
    In International Conference on Advanced Information Systems Engineering , Dec 2025

2024

  1. Building expertise on FAIR through evolving Bring Your Own Data (BYOD) workshops: describing the data, software, and management-focused approaches and their evolution
    César Bernabé, Lieze Thielemans , Rajaram Kaliyaperumal , and 8 more authors
    Data Intelligence, Dec 2024

2023

  1. The use of foundational ontologies in biomedical research
    César Bernabé, Núria Queralt-Rosinach , Vı́tor E Silva Souza , and 4 more authors
    Journal of Biomedical Semantics, Dec 2023
  2. A FAIR catalog of ontology-driven conceptual models
    Tiago Prince Sales , Pedro Paulo F Barcelos , Claudenir M Fonseca , and 8 more authors
    Data & Knowledge Engineering, Dec 2023
  3. A resource for guiding data stewards to make European rare disease patient registries FAIR
    Philip Van Damme , Pablo Alarcón Moreno , César Bernabé, and 8 more authors
    Data Science Journal, Dec 2023
  4. A Method to Improve Alignments Between Domain and Foundational Ontologies
    César Bernabé, C Maria Keet , Zubeida C Khan , and 1 more author
    In Formal Ontology in Information Systems , Dec 2023

2022

  1. Towards FAIRification of sensitive and fragmented rare disease patient data: challenges and solutions in European reference network registries
    Bruna Santos Vieira , César Bernabé, Shuxin Zhang , and 8 more authors
    Orphanet journal of rare diseases, Dec 2022
  2. Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic
    Núria Queralt-Rosinach , Rajaram Kaliyaperumal , César Bernabé, and 8 more authors
    Journal of biomedical semantics, Dec 2022

2019

  1. GORO 2.0: Evolving an ontology for goal-oriented requirements engineering
    César Bernabé, Vı́tor E Silva Souza , Ricardo de Almeida Falbo , and 2 more authors
    In Advances in Conceptual Modeling: ER 2019 Workshops FAIR, MREBA, EmpER, MoBiD, OntoCom, and ER Doctoral Symposium Papers, Salvador, Brazil, November 4–7, 2019, Proceedings 38 , Dec 2019

2018

  1. Where enterprise architecture and early software engineering meet: An approach to use cases definition
    Gabriel M Miranda , César Bernabé, Lucas A Santos , and 1 more author
    In Proceedings of the XVII Brazilian Symposium on Software Quality , Dec 2018